JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKD1_chr16_2083708_2140898	0/0	a0066	4303	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0067	4303	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0068	4303	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0069	2820	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0070	4303	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0071	4303	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0072	4303	1	1	0	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0073	580	1	0	1	0	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0074	4303	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD1_chr16_2083708_2140898	0/0	a0075	4303	1	0	0	1	0	0	copy fasta	PKD1	chr16	2083708	2140898
PKD2L1_chr10_100283149_100335228	1/1	a0001	805	211	48	47	78	8	28	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0002	805	22	8	2	9	0	3	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0003	805	18	1	6	8	1	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0004	406	17	16	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0005	805	10	0	0	10	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0006	805	5	3	0	0	2	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0007	805	5	2	1	1	1	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0008	805	2	0	0	0	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0009	805	2	2	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0010	805	2	0	0	0	0	2	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0011	406	2	2	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0012	805	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0013	805	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0014	805	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0015	805	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0016	805	1	0	0	1	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0017	805	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0018	805	1	0	0	1	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0019	805	1	1	0	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0020	805	1	0	1	0	0	0	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L1_chr10_100283149_100335228	0/0	a0021	805	1	0	0	0	0	1	copy fasta	PKD2L1	chr10	100283149	100335228
PKD2L2_chr5_137884457_137947747	0/1	a0001	624	252	50	53	114	6	28	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0002	624	66	27	18	7	8	6	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	1/0	a0003	624	12	11	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0004	624	2	2	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0005	624	1	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0006	624	1	0	0	1	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0007	624	1	1	0	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2L2_chr5_137884457_137947747	0/0	a0008	624	1	0	1	0	0	0	copy fasta	PKD2L2	chr5	137884457	137947747
PKD2_chr4_88002635_88082777	1/0	a0001	968	244	58	45	114	6	20	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0002	968	46	0	5	37	2	2	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/1	a0003	968	34	13	12	0	2	6	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0004	968	8	0	0	7	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0005	969	3	3	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0006	968	2	1	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0007	968	1	0	1	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0008	968	1	0	0	0	0	1	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0009	968	1	1	0	0	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0010	968	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777
PKD2_chr4_88002635_88082777	0/0	a0011	968	1	0	0	1	0	0	copy fasta	PKD2	chr4	88002635	88082777