JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKDCC_chr2_42043021_42063517	1/1	a0001	493	300	89	50	106	14	39	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0002	493	123	6	27	83	0	7	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0003	493	3	0	1	0	0	2	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0004	493	2	0	2	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0005	493	2	0	2	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0006	493	1	0	0	1	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDCC_chr2_42043021_42063517	0/0	a0007	493	1	1	0	0	0	0	copy fasta	PKDCC	chr2	42043021	42063517
PKDREJ_chr22_46250663_46268343	1/1	a0001	2253	207	27	54	81	12	31	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0002	2251	29	22	2	0	0	5	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0003	2253	14	6	4	0	2	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0004	2251	11	10	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0005	2251	6	5	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0006	2253	4	2	2	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0007	2251	4	4	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0008	2253	2	2	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0009	2253	2	2	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0010	2253	2	0	0	0	0	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0011	2253	2	0	0	2	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0012	2253	2	0	0	0	0	2	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0013	2251	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0014	2251	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0015	2251	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0016	2251	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0017	2253	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0018	2253	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0019	2253	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0020	2253	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0021	2253	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0022	2253	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0023	2253	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0024	2253	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0025	2253	1	1	0	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0026	2253	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0027	2253	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0028	2253	1	0	0	1	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0029	2253	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0030	2253	1	0	1	0	0	0	copy fasta	PKDREJ	chr22	46250663	46268343
PKDREJ_chr22_46250663_46268343	0/0	a0031	2253	1	0	0	0	0	1	copy fasta	PKDREJ	chr22	46250663	46268343
PKHD1L1_chr8_109357461_109542207	0/0	a0001	4243	68	5	17	36	3	7	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	1/0	a0002	4243	58	7	14	27	3	6	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0003	4243	20	3	5	0	3	9	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0004	4243	15	0	8	4	2	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0005	4243	9	9	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0006	4243	7	6	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0007	4243	6	5	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0008	4243	6	5	1	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0009	4243	4	0	0	4	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0010	4243	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0011	4243	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0012	4243	4	4	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207