JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKHD1L1_chr8_109357461_109542207	0/0	a0063	4243	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0064	4243	1	0	0	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0065	4243	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0066	4243	1	0	0	1	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0067	4243	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0068	4243	1	0	0	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0069	4243	1	1	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/0	a0070	4243	1	0	0	0	0	1	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1L1_chr8_109357461_109542207	0/1	a0071	4243	1	0	0	0	0	0	copy fasta	PKHD1L1	chr8	109357461	109542207
PKHD1_chr6_51610299_52092613	0/0	a0001	4074	28	14	4	9	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0002	4074	19	5	3	7	0	4	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/1	a0003	4074	14	3	4	2	1	3	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0004	4074	12	3	3	4	0	2	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0005	4074	4	2	2	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0006	4074	4	4	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0007	4074	4	0	0	4	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	1/0	a0008	4074	3	2	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0009	4074	3	2	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0010	4074	3	1	0	1	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0011	4074	2	2	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0012	4074	2	0	0	1	1	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0013	4074	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0014	4074	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0015	4074	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0016	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0017	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0018	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0019	4074	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0020	2670	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0021	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0022	4074	1	0	0	0	0	1	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0023	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0024	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0025	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0026	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0027	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0028	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0029	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0030	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0031	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0032	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0033	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0034	4074	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0035	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0036	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0037	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0038	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0039	4008	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0040	4074	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0041	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613