JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKHD1_chr6_51610299_52092613	0/0	a0042	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0043	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0044	4074	1	0	0	1	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0045	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0046	4074	1	0	1	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0047	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKHD1_chr6_51610299_52092613	0/0	a0048	4074	1	1	0	0	0	0	copy fasta	PKHD1	chr6	51610299	52092613
PKIA_chr8_78511340_78610267	1/1	a0001	76	186	68	40	48	10	18	copy fasta	PKIA	chr8	78511340	78610267
PKIB_chr6_122605405_122731373	1/1	a0001	78	312	76	54	130	16	34	copy fasta	PKIB	chr6	122605405	122731373
PKIG_chr20_44577579_44624037	1/1	a0001	76	300	90	72	96	12	28	copy fasta	PKIG	chr20	44577579	44624037
PKLR_chr1_155284293_155306438	0/1	a0001	574	301	88	54	112	9	37	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0002	574	3	0	0	3	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0003	574	2	0	1	0	1	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0004	574	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0005	393	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0006	574	1	0	1	0	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0007	574	1	0	0	0	0	1	copy fasta	PKLR	chr1	155284293	155306438
PKLR_chr1_155284293_155306438	0/0	a0008	574	1	0	0	1	0	0	copy fasta	PKLR	chr1	155284293	155306438
PKMYT1_chr16_2967808_2985446	1/1	a0001	499	379	91	76	162	14	34	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0002	499	3	0	0	3	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0003	499	3	0	0	3	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0004	499	2	0	2	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0005	499	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0006	499	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0007	499	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0008	499	1	1	0	0	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKMYT1_chr16_2967808_2985446	0/0	a0009	499	1	0	0	1	0	0	copy fasta	PKMYT1	chr16	2967808	2985446
PKM_chr15_72194029_72236190	1/1	a0001	531	365	91	67	165	8	32	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	a0002	531	3	0	3	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	a0003	531	1	1	0	0	0	0	copy fasta	PKM	chr15	72194029	72236190
PKM_chr15_72194029_72236190	0/0	a0004	531	1	0	0	1	0	0	copy fasta	PKM	chr15	72194029	72236190
PKN1_chr19_14428306_14476859	1/1	a0001	942	136	35	45	8	12	34	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0002	942	116	4	6	101	3	2	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0003	942	76	43	16	15	0	2	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0004	389	17	2	6	6	0	3	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0005	860	12	4	0	6	0	2	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0006	942	6	0	2	0	3	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0007	942	3	0	1	2	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0008	942	2	2	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0009	389	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0010	389	1	0	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0011	942	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0012	942	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0013	860	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0014	942	1	0	0	0	0	1	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0015	942	1	0	0	1	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN1_chr19_14428306_14476859	0/0	a0016	942	1	1	0	0	0	0	copy fasta	PKN1	chr19	14428306	14476859
PKN2_chr1_88679273_88841255	1/1	a0001	984	319	74	60	155	10	18	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	a0002	984	6	6	0	0	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	a0003	984	2	0	0	2	0	0	copy fasta	PKN2	chr1	88679273	88841255