JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKN2_chr1_88679273_88841255	0/0	a0004	984	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	a0005	984	1	0	0	0	0	1	copy fasta	PKN2	chr1	88679273	88841255
PKN2_chr1_88679273_88841255	0/0	a0006	984	1	0	0	1	0	0	copy fasta	PKN2	chr1	88679273	88841255
PKN3_chr9_128697503_128725916	1/1	a0001	889	336	79	68	137	14	36	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0002	889	8	8	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0003	889	2	0	0	0	0	2	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0004	889	2	2	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0005	889	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0006	889	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0007	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0008	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0009	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0010	889	1	1	0	0	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0011	889	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0012	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0013	889	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0014	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0015	889	1	0	0	1	0	0	copy fasta	PKN3	chr9	128697503	128725916
PKN3_chr9_128697503_128725916	0/0	a0016	889	1	0	0	0	0	1	copy fasta	PKN3	chr9	128697503	128725916
PKNOX1_chr21_42969562_43038931	1/1	a0001	436	361	84	72	151	18	34	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	a0002	436	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX2_chr11_125159751_125438389	1/1	a0001	472	213	75	35	63	6	32	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	a0002	471	8	0	3	5	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	a0003	472	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKP1_chr1_201278506_201337989	1/1	a0001	726	275	51	49	129	10	34	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0002	726	32	20	5	0	2	5	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0003	726	9	9	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0004	726	9	9	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0005	726	2	0	0	2	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0006	726	2	0	2	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0007	726	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0008	726	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0009	726	1	0	0	0	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	a0010	726	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP2_chr12_32785755_32901777	1/1	a0001	837	279	71	50	115	8	33	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0002	837	40	14	12	7	2	5	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0003	837	4	4	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0004	837	3	0	0	0	0	3	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0005	837	3	3	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0006	837	2	0	0	2	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0007	837	2	0	0	2	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0008	837	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0009	837	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0010	837	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0011	837	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0012	837	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0013	837	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0014	837	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0015	837	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	a0016	837	1	0	0	0	0	1	copy fasta	PKP2	chr12	32785755	32901777