JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PKP3_chr11_389209_409908	1/1	a0001	797	193	59	38	66	6	22	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0002	797	3	3	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0003	797	3	3	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0004	797	2	0	1	0	1	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0005	641	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0006	797	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0007	797	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0008	797	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0009	797	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0010	797	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0011	797	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0012	797	1	0	1	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0013	797	1	0	0	0	0	1	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0014	797	1	0	0	0	1	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0015	370	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0016	797	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0017	797	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0018	797	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	a0019	797	1	0	0	1	0	0	copy fasta	PKP3	chr11	389209	409908
PKP4_chr2_158451952_158686429	1/1	a0001	1192	295	77	36	127	18	35	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0002	1192	3	3	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0003	1192	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0004	1192	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0005	1192	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0006	1192	1	0	0	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0007	1192	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0008	1192	1	0	1	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0009	1192	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0010	1192	1	0	1	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0011	1192	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	a0012	1192	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PLA1A_chr3_119592885_119634811	1/1	a0001	456	381	67	70	193	11	38	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0002	456	17	16	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0003	456	5	5	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0004	456	4	0	3	0	1	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0005	456	3	0	3	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0006	456	3	3	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0007	456	2	1	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0008	456	2	2	0	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0009	456	1	0	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0010	456	1	0	0	1	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	a0011	456	1	0	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA2G10_chr16_14667548_14699308	0/1	a0001	165	398	91	73	172	16	45	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0002	165	4	0	1	3	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0003	54	1	0	0	0	0	1	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0004	89	1	0	0	1	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0005	165	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0006	165	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	a0007	165	1	1	0	0	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G12A_chr4_109704989_109735070	1/1	a0001	189	405	94	72	175	16	46	copy fasta	PLA2G12A	chr4	109704989	109735070