JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLA2G12A_chr4_109704989_109735070	0/0	a0002	189	2	0	2	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	a0003	189	1	0	0	1	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	a0004	189	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	a0005	189	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	a0006	189	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	a0007	189	1	0	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12B_chr10_72929762_72959806	1/1	a0001	195	326	96	52	132	12	32	copy fasta	PLA2G12B	chr10	72929762	72959806
PLA2G15_chr16_68240373_68266058	1/1	a0001	412	266	85	54	85	4	36	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	a0002	412	2	0	0	2	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	a0003	412	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	a0004	412	1	0	0	1	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G1B_chr12_120317115_120332779	1/1	a0001	148	403	96	64	186	15	40	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	a0002	148	1	0	0	0	1	0	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G2A_chr1_19970435_19984618	1/1	a0001	144	470	100	80	222	17	49	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	a0002	144	12	0	2	8	1	1	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2C_chr1_20158055_20191518	0/0	a0001	149	194	40	29	104	6	15	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	a0002	149	126	18	39	45	8	16	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	a0003	32	84	34	8	25	2	15	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	a0004	77	2	2	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2D_chr1_20106939_20124536	0/1	a0001	145	339	91	55	152	9	31	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	1/0	a0002	145	117	2	25	61	9	19	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	a0003	145	5	5	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	a0004	145	2	2	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	a0005	145	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2E_chr1_19915009_19928617	1/1	a0001	142	370	90	75	150	14	39	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	a0002	142	39	6	4	16	4	9	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	a0003	142	1	0	1	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2F_chr1_20134323_20155381	1/1	a0001	211	446	100	80	199	18	47	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	a0002	211	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	a0003	211	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	a0004	211	1	0	0	0	0	1	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	a0005	211	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G3_chr22_31129807_31145508	0/0	a0001	509	128	18	17	92	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/1	a0002	509	117	41	27	24	5	19	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0003	509	105	0	11	80	2	12	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	1/0	a0004	509	69	23	20	14	8	3	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0005	509	30	8	9	5	3	5	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0006	509	3	0	1	2	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0007	509	3	0	0	2	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0008	509	2	0	0	2	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0009	509	1	1	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0010	509	1	1	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0011	509	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0012	509	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0013	509	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0014	509	1	0	0	0	0	1	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	a0015	509	1	0	1	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G4A_chr1_186823949_186993981	0/1	a0001	749	301	83	53	111	12	41	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	1/0	a0002	749	3	0	1	0	0	1	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	a0003	749	2	0	0	0	2	0	copy fasta	PLA2G4A	chr1	186823949	186993981