JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLA2G4A_chr1_186823949_186993981	0/0	a0004	749	1	1	0	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	a0005	749	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	a0006	749	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	a0007	749	1	0	0	1	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4B_chr15_41833847_41853143	1/1	a0001	781	266	83	59	70	13	39	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0002	781	107	1	18	79	0	9	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0003	781	6	0	0	6	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0004	781	6	5	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0005	781	2	0	0	2	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0006	781	2	2	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0007	781	2	2	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0008	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0009	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0010	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0011	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0012	781	1	0	0	0	1	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0013	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0014	781	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0015	781	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0016	781	1	0	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0017	781	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0018	781	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0019	781	1	0	1	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0020	781	1	1	0	0	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0021	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	a0022	781	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4C_chr19_48042846_48115817	0/0	a0001	541	84	9	13	54	1	7	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	1/0	a0002	541	48	9	23	0	6	9	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/1	a0003	541	40	6	13	14	3	3	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0004	541	35	12	3	19	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0005	541	26	16	2	7	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0006	541	12	4	1	4	0	3	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0007	541	10	0	3	2	2	3	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0008	541	10	9	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0009	541	9	1	2	5	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0010	541	7	1	1	0	0	5	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0011	541	5	4	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0012	541	3	0	3	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0013	541	3	1	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0014	541	3	3	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0015	541	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0016	541	2	0	0	0	2	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0017	541	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0018	541	2	2	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0019	541	2	0	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0020	541	2	0	0	1	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0021	541	2	1	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0022	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0023	541	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0024	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817