Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCF3_chr3_184181199_184199005	0/0	a0006	709	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0007	709	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0008	709	1	0	1	0	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0009	709	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0010	458	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	a0011	709	1	0	0	1	0	0	copy fasta	ABCF3	chr3	184181199	184199005
ABCG1_chr21_42214140_42302244	1/1	a0001	666	351	94	74	124	18	39	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	a0002	666	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	a0003	666	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	a0004	666	1	0	0	0	0	1	copy fasta	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	1/1	a0001	655	210	72	44	58	6	28	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0002	655	70	6	19	36	3	6	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0003	655	60	2	9	42	1	6	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0004	125	3	0	0	3	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0005	655	2	0	2	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0006	655	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0007	655	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0008	655	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0009	655	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	a0010	655	1	0	0	1	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	1/1	a0001	646	349	70	61	160	16	40	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0002	646	25	22	3	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0003	646	7	6	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0004	646	2	0	0	0	0	2	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0005	646	2	0	0	2	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0006	646	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0007	646	1	1	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	a0008	646	1	0	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	1/1	a0001	651	224	46	52	75	15	34	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0002	651	70	27	18	13	3	9	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0003	651	12	4	3	3	0	2	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0004	651	6	2	2	1	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0005	651	5	5	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0006	651	5	4	1	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0007	651	2	2	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0008	651	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0009	651	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0010	651	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0011	651	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0012	651	1	0	0	1	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	a0013	651	1	1	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	0/0	a0001	673	111	14	14	66	1	16	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0002	673	78	23	20	22	4	9	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0003	673	66	26	21	9	3	7	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0004	673	12	0	9	0	1	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	1/1	a0005	673	12	2	6	0	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0006	673	12	4	2	4	0	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0007	673	7	6	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0008	673	5	5	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	a0009	673	4	4	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988