JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARSD_chrX_2898972_2934339	0/0	a0006	593	2	0	0	2	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0007	323	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0008	593	1	1	0	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0009	593	1	0	1	0	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSD_chrX_2898972_2934339	0/0	a0010	63	1	0	0	1	0	0	copy fasta	ARSD	chrX	2898972	2934339
ARSF_chrX_3036471_3117727	0/0	a0000	0	2	2	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	1/1	a0001	590	169	32	25	74	10	26	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0002	590	9	2	5	1	1	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0003	590	4	3	1	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0004	590	3	3	0	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0005	590	3	1	2	0	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0006	590	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0007	590	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSF_chrX_3036471_3117727	0/0	a0008	519	1	0	0	1	0	0	copy fasta	ARSF	chrX	3036471	3117727
ARSG_chr17_68286495_68425814	1/1	a0001	525	158	43	34	57	6	16	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0002	525	57	18	18	9	3	9	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0003	525	31	3	0	23	0	5	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0004	525	22	11	2	7	1	1	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0005	525	15	2	5	5	2	1	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0006	525	10	0	0	6	0	4	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0007	525	3	0	0	3	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0008	525	3	3	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0009	525	2	0	0	2	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0010	525	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0011	525	1	1	0	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSG_chr17_68286495_68425814	0/0	a0012	525	1	0	1	0	0	0	copy fasta	ARSG	chr17	68286495	68425814
ARSH_chrX_3001546_3039111	1/1	a0001	562	226	43	45	97	12	27	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0002	562	7	0	4	0	1	2	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0003	562	4	0	0	4	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0004	562	3	2	1	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0005	562	2	0	2	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0006	562	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0007	562	1	1	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0008	562	1	1	0	0	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0009	373	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0010	450	1	0	0	1	0	0	copy fasta	ARSH	chrX	3001546	3039111
ARSH_chrX_3001546_3039111	0/0	a0011	562	1	0	0	0	0	1	copy fasta	ARSH	chrX	3001546	3039111
ARSI_chr5_150291343_150307905	1/1	a0001	569	445	94	78	211	14	46	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0002	569	5	5	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0003	569	2	0	0	0	2	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0004	569	1	0	0	1	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0005	569	1	1	0	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0006	569	1	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSI_chr5_150291343_150307905	0/0	a0007	569	1	0	1	0	0	0	copy fasta	ARSI	chr5	150291343	150307905
ARSJ_chr4_113895284_113984647	1/1	a0001	599	341	85	60	148	8	38	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	a0002	599	5	5	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	a0003	599	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	a0004	599	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	a0005	599	1	0	0	1	0	0	copy fasta	ARSJ	chr4	113895284	113984647
ARSJ_chr4_113895284_113984647	0/0	a0006	599	1	1	0	0	0	0	copy fasta	ARSJ	chr4	113895284	113984647