JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLA2G4C_chr19_48042846_48115817	0/0	a0025	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0026	535	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0027	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0028	541	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0029	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0030	523	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0031	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0032	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0033	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	a0034	541	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4D_chr15_42062009_42099562	1/0	a0001	818	247	60	30	123	11	22	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/1	a0002	818	124	16	30	57	6	14	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0003	818	14	0	0	14	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0004	818	11	2	7	0	1	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0005	818	10	0	0	10	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0006	818	6	4	1	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0007	818	3	0	0	3	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0008	818	3	3	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0009	818	3	2	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0010	818	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0011	818	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0012	818	1	0	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0013	818	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0014	818	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0015	818	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0016	818	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0017	818	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0018	818	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0019	818	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	a0020	818	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4E_chr15_41976582_42026042	1/1	a0001	839	334	70	57	148	13	44	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0002	839	44	1	9	31	1	2	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0003	839	8	8	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0004	839	7	0	0	7	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0005	839	5	5	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0006	839	4	2	2	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0007	839	4	3	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0008	839	3	0	0	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0009	839	3	0	0	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0010	839	2	0	0	0	0	2	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0011	839	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0012	839	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0013	839	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0014	839	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0015	839	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0016	839	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0017	839	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	a0018	839	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4F_chr15_42134034_42161636	0/0	a0001	849	187	27	21	106	9	24	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	a0002	849	85	38	23	19	0	5	copy fasta	PLA2G4F	chr15	42134034	42161636