JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLAC9_chr10_80127730_80150359	0/0	a0003	97	1	1	0	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	a0004	97	1	0	0	0	0	1	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	a0005	97	1	0	1	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAG1_chr8_56155909_56216273	1/0	a0001	500	264	76	48	106	9	24	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/1	a0002	500	43	0	10	19	3	10	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	a0003	500	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAGL1_chr6_143935300_144013259	1/1	a0001	463	383	89	76	166	14	36	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	a0002	463	4	0	0	4	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	a0003	463	3	3	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	a0004	463	3	0	0	3	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	a0005	463	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL2_chr20_32187504_32212743	1/1	a0001	496	343	86	73	139	12	31	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	a0002	496	2	1	1	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	a0003	496	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	a0004	496	1	0	0	0	0	1	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	a0005	496	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAT_chr8_42169718_42212565	1/1	a0001	562	370	84	65	165	16	38	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0002	562	2	2	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0003	562	2	2	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0004	562	1	0	1	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0005	560	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0006	562	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	a0007	562	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAUR_chr19_43643579_43675169	1/1	a0001	335	342	69	50	177	10	34	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0002	335	67	14	23	19	4	7	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0003	335	17	2	8	0	2	5	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0004	335	10	9	1	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0005	335	4	4	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0006	335	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	a0007	335	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAU_chr10_73906132_73922494	0/0	a0001	431	314	80	58	140	7	29	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	1/0	a0002	431	92	1	22	50	5	13	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0003	431	15	13	1	0	0	1	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0004	431	3	0	0	3	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0005	431	2	0	0	2	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0006	431	1	0	0	0	0	1	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/1	a0007	431	1	0	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0008	431	1	0	1	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	a0009	431	1	0	0	1	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLB1_chr2_28491060_28649142	0/0	a0001	1458	59	18	10	23	3	5	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0002	1458	36	8	9	11	2	6	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	1/1	a0003	1458	35	4	9	9	3	8	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0004	1458	20	13	4	1	0	2	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0005	1458	14	3	5	3	2	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0006	1458	11	2	1	7	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0007	1458	10	0	2	5	1	2	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0008	1458	10	3	2	1	2	2	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0009	1458	10	3	2	5	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0010	1458	8	0	4	1	0	3	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0011	1458	5	0	1	3	0	1	copy fasta	PLB1	chr2	28491060	28649142