JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLB1_chr2_28491060_28649142	0/0	a0012	1458	4	4	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0013	1458	3	0	1	2	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0014	1458	3	1	2	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0015	1458	2	0	2	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0016	1458	2	2	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0017	1458	2	1	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0018	1458	2	1	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0019	1458	2	1	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0020	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0021	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0022	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0023	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0024	1458	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0025	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0026	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0027	1458	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0028	1458	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0029	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0030	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0031	1458	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0032	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0033	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0034	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0035	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0036	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0037	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0038	1458	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0039	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0040	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0041	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0042	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0043	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0044	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0045	1458	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0046	1458	1	0	0	0	1	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	a0047	1458	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLBD1_chr12_14498661_14572883	0/0	a0001	552	117	17	19	60	5	16	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0002	552	89	27	13	40	2	7	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0003	553	49	6	12	26	2	3	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/1	a0004	553	23	0	9	8	3	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0005	553	22	17	1	4	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	1/0	a0006	553	18	15	2	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0007	552	18	0	12	3	2	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0008	552	7	0	3	3	0	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0009	553	3	3	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0010	552	3	0	0	0	0	3	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0011	553	2	2	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0012	552	2	0	0	0	0	2	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0013	552	2	2	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0014	553	1	0	1	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883