JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLBD1_chr12_14498661_14572883	0/0	a0015	553	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0016	552	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0017	552	1	1	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	a0018	552	1	0	0	0	0	1	copy fasta	PLBD1	chr12	14498661	14572883
PLBD2_chr12_113353587_113396629	0/1	a0001	589	173	67	19	65	5	16	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	1/0	a0002	589	88	5	39	32	2	9	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0003	589	11	4	3	0	1	3	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0004	589	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0005	589	1	0	0	1	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0006	589	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0007	589	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0008	589	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	a0009	589	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLCB1_chr20_8127266_8889900	0/0	a0001	1216	99	52	22	16	4	5	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0002	1216	2	1	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0003	1216	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0004	1216	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0005	1216	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0006	1216	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	a0007	1216	1	0	0	0	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB2_chr15_40282909_40312935	1/1	a0001	1185	291	85	57	93	16	38	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0002	1185	80	0	9	69	0	2	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0003	1185	5	5	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0004	1185	2	2	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0005	1185	2	0	0	2	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0006	1185	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0007	1185	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0008	1185	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0009	1185	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0010	1185	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0011	1185	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0012	1185	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	a0013	1185	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB3_chr11_64246530_64272923	1/1	a0001	1234	322	86	64	130	11	29	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0002	1234	29	4	5	16	2	2	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0003	1234	10	1	5	0	3	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0004	1234	7	2	0	5	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0005	1234	3	3	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0006	1234	2	0	0	2	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0007	1234	2	0	0	1	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0008	1234	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0009	1234	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0010	1234	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0011	1234	1	0	0	0	0	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0012	1234	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0013	1234	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	a0014	1234	1	0	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB4_chr20_9064087_9485808	1/0	a0001	1206	86	51	13	13	1	7	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/1	a0002	1206	53	8	15	15	3	11	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	a0003	1206	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808