JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLCD1_chr3_38002496_38034642	1/1	a0001	756	308	78	67	115	12	34	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0002	756	33	1	0	30	0	2	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0003	756	9	7	2	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0004	756	7	5	0	1	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0005	756	2	0	0	2	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0006	756	1	0	0	0	0	1	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0007	756	1	0	1	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	a0008	756	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD3_chr17_45103959_45137515	1/1	a0001	789	426	86	82	188	18	50	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0002	789	3	0	0	3	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0003	789	2	2	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0004	789	2	2	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0005	789	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0006	789	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	a0007	789	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD4_chr2_218602899_218642175	1/1	a0001	762	292	90	56	102	8	34	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	a0002	386	3	3	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	a0003	116	1	1	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	a0004	762	1	0	0	1	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	a0005	762	1	0	0	1	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCE1_chr10_93988931_94337823	1/1	a0001	2302	31	5	11	7	3	3	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0002	2302	30	15	5	7	2	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0003	2302	17	6	3	8	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0004	2302	6	3	1	2	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0005	2302	5	5	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0006	2302	5	1	4	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0007	2302	4	4	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0008	2302	3	0	2	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0009	2302	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0010	2302	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0011	2302	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0012	2302	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0013	2302	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0014	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0015	2302	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0016	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0017	2302	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0018	2302	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0019	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0020	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0021	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0022	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	a0023	2302	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCG1_chr20_41132543_41182626	0/1	a0001	1291	288	76	41	140	10	20	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	1/0	a0002	1291	72	2	23	32	3	11	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	a0003	1291	28	12	10	1	3	2	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	a0004	1291	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	a0005	1291	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG2_chr16_81774291_81967685	1/1	a0001	1265	295	79	56	104	13	41	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0002	1265	7	0	6	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685