JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLCG2_chr16_81774291_81967685	0/0	a0003	1265	2	0	0	0	2	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0004	1265	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0005	1265	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0006	1265	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0007	1265	2	0	1	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0008	1265	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0009	1265	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0010	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0011	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0012	1265	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0013	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0014	1265	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0015	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0016	1265	1	0	0	1	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0017	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0018	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0019	1265	1	0	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0020	1265	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0021	1265	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0022	1265	1	0	0	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	a0023	1265	1	0	0	1	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCH1_chr3_155474881_155750071	1/1	a0001	1685	238	78	43	81	6	28	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0002	1685	8	0	0	8	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0003	1685	5	5	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0004	1685	3	0	2	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0005	1685	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0006	1685	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0007	1685	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0008	1685	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0009	1685	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0010	1685	1	0	1	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0011	1685	1	0	0	0	0	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0012	1685	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0013	1685	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	a0014	1685	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH2_chr1_2471289_2510532	0/0	a0001	1416	318	69	64	138	13	34	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0002	1416	12	0	0	12	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0003	1416	10	7	0	1	0	2	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0004	1416	7	6	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0005	1416	5	0	0	4	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/1	a0006	1416	2	0	0	0	1	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0007	1416	2	2	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0008	1416	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0009	1416	2	2	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0010	1416	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0011	1416	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0012	1416	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0013	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0014	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0015	1416	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532