JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLCH2_chr1_2471289_2510532	0/0	a0016	1416	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0017	1416	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0018	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0019	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0020	1416	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0021	1416	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0022	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0023	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0024	1416	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0025	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0026	1416	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0027	1416	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0028	1416	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0029	1416	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	a0030	1416	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCL1_chr2_197799593_198154863	0/0	a0001	1095	142	41	24	64	4	9	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	a0002	1095	62	13	14	28	2	5	copy fasta	PLCL1	chr2	197799593	198154863
PLCL2_chr3_16879955_17095604	0/0	a0000	0	4	3	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	1/1	a0001	1127	242	81	49	67	10	33	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	a0002	1127	2	2	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	a0003	1127	1	0	0	0	0	1	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	a0004	1127	1	0	0	1	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCXD1_chrX_276381_308356	0/0	a0000	0	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	1/1	a0001	323	162	32	31	82	5	10	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0002	323	3	1	2	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0003	323	2	0	0	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0004	202	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0005	202	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0006	61	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0007	214	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0008	323	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0009	323	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0010	323	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	a0011	323	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD2_chr3_111669676_111732007	1/1	a0001	341	312	83	61	112	14	40	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	a0002	341	8	0	0	8	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	a0003	341	2	0	0	2	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	a0004	341	1	0	1	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	a0005	341	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD3_chr5_41301952_41515601	1/1	a0001	321	242	85	47	84	10	14	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	a0002	321	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	a0003	321	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCZ1_chr12_18678180_18743012	1/1	a0001	608	320	90	56	128	15	29	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	a0002	608	2	0	0	0	1	1	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	a0003	608	2	2	0	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	a0004	608	1	0	0	1	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	a0005	608	1	0	0	1	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLD1_chr3_171595404_171815483	1/1	a0001	1074	210	63	39	76	8	22	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0002	1074	53	13	6	23	2	9	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0003	1074	9	0	4	5	0	0	copy fasta	PLD1	chr3	171595404	171815483