JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLD1_chr3_171595404_171815483	0/0	a0004	1074	4	4	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0005	1074	4	0	3	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0006	1074	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0007	1074	2	0	0	2	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0008	1074	2	0	0	0	0	2	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0009	1074	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0010	1074	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0011	1074	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0012	1074	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0013	1074	1	0	0	0	0	1	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	a0014	1074	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD2_chr17_4802152_4828430	1/0	a0001	933	135	39	25	60	4	6	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0002	933	103	0	5	77	1	20	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/1	a0003	933	76	7	26	26	4	12	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0004	933	42	12	6	19	2	3	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0005	933	28	5	5	11	3	4	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0006	933	18	18	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0007	933	13	6	4	0	0	3	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0008	933	8	0	6	1	1	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0009	933	4	4	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0010	933	2	0	0	2	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0011	933	2	0	2	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0012	933	2	0	1	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0013	933	1	0	0	0	1	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0014	933	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0015	933	1	0	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0016	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0017	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0018	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0019	933	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0020	933	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0021	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0022	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0023	933	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0024	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0025	933	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0026	937	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0027	933	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0028	425	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	a0029	933	1	0	0	1	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD3_chr19_40343695_40383485	1/1	a0001	490	360	100	64	146	18	30	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	a0002	490	2	0	2	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	a0003	490	1	0	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	a0004	490	1	0	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD4_chr14_104919879_104938236	1/1	a0001	506	200	54	40	67	7	30	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0002	506	186	22	37	109	5	13	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0003	506	18	0	2	11	0	5	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0004	506	11	11	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0005	506	2	2	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0006	506	2	0	0	2	0	0	copy fasta	PLD4	chr14	104919879	104938236