JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARSK_chr5_95550101_95610102	1/0	a0001	536	279	66	55	116	12	29	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/1	a0002	536	41	3	1	32	0	4	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0003	536	6	6	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0004	536	2	2	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0005	536	2	0	0	0	2	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0006	536	2	0	0	2	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0007	536	1	0	0	1	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0008	536	1	1	0	0	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0009	536	1	0	0	0	0	1	copy fasta	ARSK	chr5	95550101	95610102
ARSK_chr5_95550101_95610102	0/0	a0010	536	1	0	0	1	0	0	copy fasta	ARSK	chr5	95550101	95610102
ARSL_chrX_2929521_2969341	0/1	a0001	589	188	6	32	113	11	25	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	1/0	a0002	589	102	51	24	19	2	5	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0003	589	12	10	2	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0004	589	9	9	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0005	589	6	0	0	6	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0006	589	3	0	0	3	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0007	589	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0008	504	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0009	583	1	0	1	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0010	514	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0011	583	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0012	374	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0013	176	1	0	0	1	0	0	copy fasta	ARSL	chrX	2929521	2969341
ARSL_chrX_2929521_2969341	0/0	a0014	589	1	1	0	0	0	0	copy fasta	ARSL	chrX	2929521	2969341
ART1_chr11_3640128_3669416	1/0	a0001	327	191	45	9	117	4	15	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/1	a0002	327	137	20	42	45	9	20	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0003	327	44	21	3	17	0	3	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0004	327	9	0	7	0	2	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0005	327	8	0	1	7	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0006	327	2	1	1	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0007	74	1	0	1	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0008	327	1	1	0	0	0	0	copy fasta	ART1	chr11	3640128	3669416
ART1_chr11_3640128_3669416	0/0	a0009	327	1	0	0	0	1	0	copy fasta	ART1	chr11	3640128	3669416
ART3_chr4_76069709_76117786	0/0	a0001	389	209	49	28	110	5	17	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	1/1	a0002	389	163	29	35	63	11	23	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	a0003	389	13	12	1	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	a0004	389	3	0	0	3	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	a0005	389	2	2	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	a0006	389	1	1	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART3_chr4_76069709_76117786	0/0	a0007	389	1	1	0	0	0	0	copy fasta	ART3	chr4	76069709	76117786
ART4_chr12_14820569_14848526	1/1	a0001	314	227	53	28	104	9	31	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0002	314	84	16	24	27	7	10	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0003	314	48	12	15	15	1	5	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0004	314	7	0	4	1	0	2	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0005	314	6	5	1	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0006	314	3	3	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0007	314	2	2	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0008	314	1	1	0	0	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0009	314	1	0	0	1	0	0	copy fasta	ART4	chr12	14820569	14848526
ART4_chr12_14820569_14848526	0/0	a0010	314	1	0	0	0	1	0	copy fasta	ART4	chr12	14820569	14848526