JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLD4_chr14_104919879_104938236	0/0	a0007	506	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0008	506	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0009	506	1	0	0	0	0	1	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0010	506	1	1	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0011	499	1	0	1	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0012	506	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	a0013	506	1	0	0	0	0	1	copy fasta	PLD4	chr14	104919879	104938236
PLD5_chr1_242077986_242529697	1/1	a0001	536	179	71	34	52	4	16	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	a0002	536	7	1	4	2	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	a0003	536	2	0	0	2	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD6_chr17_17195995_17211333	1/1	a0001	252	434	94	81	189	18	50	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	a0002	252	1	0	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	a0003	252	1	0	0	1	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLEC_chr8_143910153_143944597	1/1	a0001	4547	105	2	27	56	6	12	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0002	4547	47	2	11	22	4	8	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0003	4547	18	0	9	4	0	5	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0004	4547	16	15	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0005	1662	15	0	1	12	0	2	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0006	4547	12	11	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0007	4547	7	7	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0008	4547	6	6	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0009	4547	5	0	0	5	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0010	4547	5	0	0	5	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0011	1662	5	0	1	1	0	3	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0012	4547	4	4	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0013	4547	4	3	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0014	4547	3	3	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0015	4547	3	0	3	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0016	4547	3	1	0	2	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0017	4547	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0018	4547	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0019	4547	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0020	4547	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0021	4547	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0022	4547	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0023	4547	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0024	1662	2	1	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0025	4547	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0026	4547	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0027	1662	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0028	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0029	1662	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0030	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0031	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0032	4547	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0033	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0034	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0035	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0036	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0037	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597