JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEC_chr8_143910153_143944597	0/0	a0088	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0089	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0090	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0091	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0092	4547	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0093	4547	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0094	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0095	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0096	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0097	4547	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0098	4547	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0099	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0100	4547	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0101	4547	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0102	4547	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0103	1662	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0104	4547	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0105	4547	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	a0106	4547	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143978529	1/1	a0001	4533	82	2	22	39	6	11	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0002	4533	43	2	11	20	4	6	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0003	4533	14	0	9	1	0	4	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0004	4533	14	13	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0005	4533	12	11	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0006	1648	9	0	1	6	0	2	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0007	4533	6	6	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0008	4533	5	5	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0009	1648	5	0	1	1	0	3	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0010	4533	4	4	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0011	4533	4	3	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0012	4533	3	3	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0013	4533	3	0	0	3	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0014	4533	3	0	0	3	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0015	4533	3	0	3	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0016	4533	3	1	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0017	4533	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0018	4533	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0019	4533	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0020	4533	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0021	4533	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0022	1648	2	1	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0023	4533	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0024	4533	2	0	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0025	4533	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0026	1648	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0027	4533	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0028	4533	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0029	4533	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0030	4533	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0031	4533	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529