JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEC_chr8_143910153_143978529	0/0	a0082	4533	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0083	4533	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0084	4533	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0085	4533	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0086	4533	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0087	4533	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0088	4533	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0089	4533	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0090	4533	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0091	4533	1	0	0	0	1	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0092	4533	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0093	1648	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0094	4533	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0095	4533	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	a0096	4533	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEK2_chr14_67381984_67417165	1/1	a0001	353	345	87	65	157	5	29	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0002	353	3	0	0	3	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0003	353	2	0	2	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0004	353	1	0	0	0	1	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0005	353	1	0	1	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0006	353	1	1	0	0	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	a0007	353	1	0	0	0	0	1	copy fasta	PLEK2	chr14	67381984	67417165
PLEKHA1_chr10_122369708_122437345	0/1	a0001	404	251	64	33	117	8	28	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	1/0	a0002	404	105	24	21	37	10	12	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	a0003	404	2	0	2	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA2_chr8_38896346_38978912	1/1	a0001	425	368	88	69	154	16	39	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	a0002	425	4	4	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	a0003	425	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	a0004	425	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	a0005	425	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	a0006	425	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA3_chr2_178475457_178521463	1/1	a0001	300	380	86	69	170	10	43	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	a0002	300	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	a0003	300	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA4_chr19_48832097_48873617	1/1	a0001	779	140	8	39	61	8	22	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0002	779	96	44	22	19	6	5	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0003	779	26	24	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0004	779	10	6	1	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0005	779	5	3	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0006	779	4	0	0	4	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0007	779	3	0	0	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0008	779	3	0	0	3	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0009	779	2	0	0	2	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0010	779	2	0	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0011	779	2	0	2	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0012	779	1	0	0	0	0	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0013	779	1	0	0	1	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0014	779	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0015	779	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0016	779	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617