JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHA4_chr19_48832097_48873617	0/0	a0017	779	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	a0018	779	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA5_chr12_19124733_19381400	1/1	a0001	1282	298	82	58	126	6	24	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0002	1282	11	0	2	8	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0003	1282	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0004	1282	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0005	1282	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0006	1282	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0007	1282	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0008	1282	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	a0009	1282	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA6_chr1_204213853_204364929	0/0	a0001	1048	105	28	33	31	3	10	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	1/0	a0002	1048	62	20	8	19	2	12	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/1	a0003	1048	58	10	18	23	3	3	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0004	1048	32	29	3	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0005	1048	2	0	0	2	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0006	1048	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0007	1048	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0008	1048	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0009	1048	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0010	1048	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0011	1048	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0012	1048	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0013	1048	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0014	1048	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0015	1048	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	a0016	1048	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA7_chr11_16772297_17019414	1/1	a0001	1271	182	52	44	59	7	18	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0002	1271	23	22	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0003	1271	16	1	3	9	0	3	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0004	1271	7	7	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0005	1271	4	4	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0006	1271	3	0	3	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0007	1271	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0008	1271	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0009	1271	1	0	0	0	1	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0010	1271	1	0	0	0	0	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0011	1271	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0012	1271	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0013	1271	1	0	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	a0014	1271	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA8_chr7_30023412_30089650	1/1	a0001	519	232	75	38	89	10	18	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	a0002	519	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	a0003	519	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHB1_chr11_73641581_73667819	0/0	a0000	0	3	3	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	1/1	a0001	243	410	89	76	177	16	50	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	a0002	243	2	0	0	2	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	a0003	243	1	0	0	1	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB2_chr2_131100336_131154845	1/1	a0001	222	264	94	54	70	12	32	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHD1_chr14_69479728_69536551	1/1	a0001	506	311	91	47	115	18	38	copy fasta	PLEKHD1	chr14	69479728	69536551