JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHD1_chr14_69479728_69536551	0/0	a0002	506	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0003	506	1	0	1	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0004	506	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0005	506	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0006	506	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0007	506	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	a0008	506	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHF1_chr19_29660461_29680477	1/1	a0001	279	436	92	82	196	14	50	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	a0002	279	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	a0003	279	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	a0004	279	1	0	0	1	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	a0005	279	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF2_chr8_95128785_95161685	1/1	a0001	249	382	100	80	142	12	46	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	a0002	249	2	0	0	0	0	2	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHG1_chr6_150594885_150848665	1/1	a0001	1385	214	61	53	68	9	21	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0002	1385	16	0	0	15	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0003	1385	10	0	0	10	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0004	1385	9	2	1	3	1	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0005	1385	4	0	0	0	0	4	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0006	1385	3	2	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0007	1385	3	3	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0008	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0009	1385	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0010	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0011	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0012	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0013	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0014	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0015	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0016	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0017	1385	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0018	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0019	1385	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	a0020	1385	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG2_chr19_39407669_39433415	1/1	a0001	1386	139	16	28	74	6	13	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0002	1386	119	39	21	43	6	10	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0003	1386	89	5	13	56	4	11	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0004	1386	11	11	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0005	1386	7	7	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0006	1386	4	0	0	4	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0007	1386	4	4	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0008	1386	4	0	3	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0009	1386	3	0	0	0	0	3	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0010	1386	3	0	1	0	0	2	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0011	1386	2	2	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0012	1386	2	2	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0013	1386	2	0	1	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0014	1386	2	0	2	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0015	1386	2	0	2	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0016	1386	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415