JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHG2_chr19_39407669_39433415	0/0	a0017	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0018	1386	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0019	1355	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0020	1386	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0021	1386	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0022	1386	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0023	1386	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0024	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0025	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0026	1386	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0027	1243	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0028	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0029	1386	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0030	1386	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0031	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0032	1386	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0033	1386	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0034	1386	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0035	1386	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	a0036	1386	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG3_chr14_64699424_64755249	1/0	a0001	1219	206	73	37	56	8	31	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/1	a0002	1219	24	14	4	0	0	5	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0003	1219	5	3	2	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0004	1219	3	3	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0005	1219	2	0	2	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0006	1219	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0007	1219	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0008	1219	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0009	1219	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0010	1219	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0011	1219	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0012	1219	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	a0013	1219	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG4B_chr5_87168_194966	0/0	a0001	1627	78	27	22	21	3	5	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0002	1627	23	0	11	7	2	3	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0003	1627	21	2	7	8	2	2	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/1	a0004	1627	11	0	3	1	1	5	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0005	1627	7	1	5	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0006	1627	7	6	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	1/0	a0007	1627	6	0	0	4	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0008	1627	5	5	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0009	1627	4	4	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0010	1627	4	3	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0011	1627	3	2	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0012	1627	3	0	0	3	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0013	1627	3	3	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0014	1627	3	3	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0015	1627	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0016	1627	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0017	1627	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966