JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHG4B_chr5_87168_194966	0/0	a0018	1627	2	0	0	2	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0019	1627	2	0	1	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0020	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0021	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0022	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0023	1627	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0024	1627	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0025	1627	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0026	1627	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0027	1627	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0028	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0029	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0030	1627	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0031	1627	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0032	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0033	1627	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0034	1627	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0035	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0036	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0037	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0038	1627	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0039	1627	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0040	1627	1	0	0	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	a0041	1627	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4_chr16_67274532_67294480	1/1	a0001	1191	230	27	66	96	16	23	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0002	1191	57	49	5	0	1	2	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0003	1191	10	4	0	6	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0004	1191	6	3	0	0	1	2	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0005	1191	3	3	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0006	1191	2	0	2	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0007	1191	2	2	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0008	1191	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0009	1191	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0010	1191	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0011	1191	1	0	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0012	1191	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0013	1191	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0014	1191	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0015	1191	1	0	0	1	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0016	1191	1	0	0	1	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0017	1191	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0018	1191	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	a0019	1191	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG5_chr1_6462122_6496667	1/1	a0001	1006	167	15	31	81	3	35	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0002	1006	28	27	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0003	1005	18	11	3	0	1	3	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0004	1005	17	17	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0005	1006	15	15	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0006	1006	10	0	6	3	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0007	1004	7	2	3	1	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667