JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHG5_chr1_6462122_6496667	0/0	a0008	1006	5	0	0	5	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0009	1006	3	3	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0010	1006	2	2	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0011	1006	1	0	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0012	1006	1	0	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0013	1004	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0014	1018	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0015	1006	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0016	1006	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0017	1006	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0018	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0019	1006	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0020	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0021	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0022	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0023	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0024	1006	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0025	1005	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	a0026	1006	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG6_chr12_6305682_6333506	1/0	a0001	790	255	44	46	128	8	28	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/1	a0002	790	175	51	30	68	8	17	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0003	790	5	0	0	5	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0004	790	3	1	2	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0005	790	2	0	0	2	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0006	790	1	0	1	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0007	790	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0008	790	1	0	1	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0009	790	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0010	790	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0011	790	1	0	0	1	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0012	790	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	a0013	790	1	0	0	0	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG7_chr12_92697989_92777455	0/0	a0001	691	100	20	23	33	6	18	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	1/1	a0002	691	96	38	18	17	9	12	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0003	691	25	22	2	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0004	691	8	0	8	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0005	691	6	0	1	0	1	4	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0006	691	5	5	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0007	417	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0008	691	2	0	0	0	0	2	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0009	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0010	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0011	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0012	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0013	288	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0014	705	1	0	0	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0015	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	a0016	691	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHH1_chr14_67528290_67594612	1/0	a0001	1364	92	40	16	26	2	7	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0002	1364	65	12	8	29	2	14	copy fasta	PLEKHH1	chr14	67528290	67594612