JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ART5_chr11_3633512_3646992	0/1	a0001	292	300	34	59	158	13	35	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0002	292	97	33	12	44	3	5	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0003	292	31	13	2	16	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	1/0	a0004	291	4	2	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0005	292	4	3	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0006	291	3	3	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0007	292	3	3	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0008	292	3	1	0	2	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0009	292	2	0	0	0	0	2	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0010	292	2	0	0	0	0	2	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0011	291	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0012	292	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0013	292	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0014	292	1	0	1	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ART5_chr11_3633512_3646992	0/0	a0015	292	1	1	0	0	0	0	copy fasta	ART5	chr11	3633512	3646992
ARTN_chr1_43928801_43942240	0/1	a0001	220	296	68	54	128	10	35	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	1/0	a0002	220	97	26	6	58	2	4	copy fasta	ARTN	chr1	43928801	43942240
ARTN_chr1_43928801_43942240	0/0	a0003	220	1	0	0	0	0	1	copy fasta	ARTN	chr1	43928801	43942240
ARV1_chr1_230974094_231005733	1/1	a0001	271	397	84	70	182	16	43	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	a0002	271	3	3	0	0	0	0	copy fasta	ARV1	chr1	230974094	231005733
ARV1_chr1_230974094_231005733	0/0	a0003	271	2	1	0	0	0	1	copy fasta	ARV1	chr1	230974094	231005733
ARVCF_chr22_19964896_20021823	0/1	a0001	962	149	32	32	65	7	12	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0002	962	76	9	20	36	2	9	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	1/0	a0003	962	61	4	10	39	3	4	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0004	962	29	15	6	3	0	5	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0005	962	24	24	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0006	962	9	0	0	7	0	2	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0007	962	4	4	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0008	962	2	2	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0009	962	2	1	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0010	962	2	0	0	2	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0011	962	2	2	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0012	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0013	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0014	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0015	962	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0016	962	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0017	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0018	962	1	0	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0019	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0020	962	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0021	962	1	0	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0022	962	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0023	962	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0024	962	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	a0025	962	1	0	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARX_chrX_24998694_25020965	1/1	a0001	562	297	74	54	124	11	32	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	a0002	17	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	a0003	236	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	a0004	236	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965