JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHH1_chr14_67528290_67594612	0/0	a0003	1364	57	5	15	27	4	6	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0004	1364	42	0	3	32	3	4	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0005	1364	22	2	4	7	2	7	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0006	1364	20	0	2	18	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0007	1364	15	2	10	2	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/1	a0008	1364	14	0	0	13	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0009	1364	13	0	1	12	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0010	1364	11	7	2	1	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0011	1364	9	1	4	2	1	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0012	1364	8	7	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0013	1364	7	7	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0014	1364	6	4	0	2	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0015	1364	5	0	4	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0016	1364	5	4	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0017	1364	2	2	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0018	1364	2	0	0	0	0	2	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0019	1364	1	0	0	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0020	1364	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0021	1364	1	0	0	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0022	1364	1	0	0	0	1	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0023	1364	1	0	0	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0024	1364	1	0	0	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0025	1364	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0026	1364	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0027	1364	1	0	0	1	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0028	1364	1	0	0	1	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0029	1364	1	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0030	1364	1	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0031	1347	1	0	0	0	1	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0032	1364	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0033	1364	1	0	0	1	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0034	1364	1	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0035	1364	1	0	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0036	1364	1	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	a0037	1364	1	1	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH2_chr2_43632260_43772987	1/1	a0001	1493	146	29	37	40	8	30	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0002	1493	38	23	3	7	1	4	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0003	1493	31	21	8	0	1	1	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0004	1492	6	6	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0005	1493	6	0	2	2	0	2	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0006	1493	4	1	3	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0007	1493	4	2	0	2	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0008	1492	2	2	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0009	1492	2	2	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0010	1492	2	0	2	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0011	1493	2	2	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0012	1493	2	2	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0013	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0014	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0015	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987