JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHH2_chr2_43632260_43772987	0/0	a0016	1493	1	0	1	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0017	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0018	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0019	1493	1	0	0	1	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0020	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0021	1492	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0022	1493	1	0	0	0	0	1	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	a0023	1493	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH3_chr17_42662914_42681994	0/1	a0001	793	344	84	70	142	10	37	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0002	793	6	1	5	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0003	793	3	0	0	3	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	1/0	a0004	793	3	0	0	0	1	1	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0005	793	1	0	1	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0006	793	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0007	793	1	1	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0008	793	1	0	0	0	1	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0009	793	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	a0010	793	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHJ1_chr19_2228153_2241329	1/1	a0001	149	423	94	81	186	16	44	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	a0002	2	1	0	1	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	a0003	38	1	0	0	1	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	a0004	149	1	0	0	1	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHM1_chr17_45430900_45495721	0/1	a0001	1056	317	87	66	119	16	28	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	a0002	1056	5	5	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	a0003	1056	1	0	0	0	0	1	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	a0004	1056	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	a0005	1056	1	0	0	0	0	1	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM2_chr1_15679320_15739769	1/1	a0001	1019	209	20	48	98	12	29	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0002	1019	114	65	21	13	5	10	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0003	1019	2	2	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0004	1019	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0005	1019	1	0	0	0	1	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0006	1019	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0007	1019	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0008	1019	1	0	1	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0009	1019	1	0	0	1	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0010	1019	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0011	1019	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0012	1019	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0013	1019	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	a0014	1019	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM3_chr2_207816288_208030527	1/1	a0001	761	189	70	36	47	14	20	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0002	761	5	4	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0003	761	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0004	761	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0005	761	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0006	761	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0007	761	1	0	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	a0008	761	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHN1_chr1_961482_980865	0/0	a0001	611	194	52	29	85	5	23	copy fasta	PLEKHN1	chr1	961482	980865