JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEKHN1_chr1_961482_980865	0/0	a0002	611	83	16	19	33	4	11	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	1/1	a0003	611	57	14	21	4	6	10	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0004	611	36	2	0	33	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0005	611	13	0	1	10	0	2	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0006	611	9	0	9	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0007	611	7	6	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0008	611	4	3	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0009	611	4	2	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0010	611	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0011	611	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0012	611	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0013	611	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0014	611	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0015	380	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0016	611	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0017	610	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0018	611	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0019	611	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0020	284	1	0	0	0	1	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0021	611	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	a0022	611	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHO1_chr1_150144916_150165065	1/1	a0001	409	394	91	76	170	16	39	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0002	409	18	0	0	18	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0003	409	5	5	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0004	409	3	0	0	3	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0005	409	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0006	409	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0007	409	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0008	409	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0009	409	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	a0010	409	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO2_chr15_64836915_64873002	1/1	a0001	490	208	81	43	38	10	34	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0002	490	103	14	12	68	0	9	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0003	490	5	0	3	0	0	2	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0004	490	2	0	1	0	0	1	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0005	490	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0006	490	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0007	490	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	a0008	490	1	0	1	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHS1_chr10_113746682_113788429	1/0	a0001	468	292	62	57	125	13	34	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/1	a0002	468	96	9	21	58	3	4	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	a0003	468	8	8	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	a0004	468	3	3	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	a0005	468	2	0	0	2	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	a0006	468	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEK_chr2_68360282_68402453	0/0	a0001	350	151	33	33	68	5	12	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0002	350	135	47	24	45	8	11	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	1/1	a0003	350	58	3	15	24	5	9	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0004	350	20	11	6	3	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0005	350	5	0	0	0	0	5	copy fasta	PLEK	chr2	68360282	68402453