JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLEK_chr2_68360282_68402453	0/0	a0006	350	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0007	350	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0008	350	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0009	350	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	a0010	350	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLET1_chr11_112243153_112265860	0/1	a0001	207	233	31	50	106	9	36	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	1/0	a0002	207	118	51	17	36	3	10	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	a0003	67	7	6	1	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	a0004	207	5	3	2	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	a0005	207	2	0	0	2	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	a0006	207	2	2	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	a0007	207	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLGLB1_chr2_87005224_87026844	0/0	a0001	96	348	38	58	194	12	46	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB2_chr2_87743087_87764476	0/1	a0001	96	305	58	62	127	16	41	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	a0002	96	4	0	2	2	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	a0003	96	2	0	0	0	0	2	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	a0004	96	1	0	0	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	a0005	96	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGRKT_chr9_5352971_5442925	1/1	a0001	147	395	92	75	175	12	39	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0002	147	11	0	0	8	0	3	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0003	147	3	0	0	3	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0004	147	2	2	0	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0005	30	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0006	147	1	0	1	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	a0007	147	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLG_chr6_160697244_160759097	1/1	a0001	810	318	67	53	148	11	37	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0002	810	42	17	20	0	3	2	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0003	810	4	4	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0004	810	4	0	4	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0005	810	4	4	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0006	810	3	0	0	3	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0007	810	2	0	0	0	0	2	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0008	810	2	0	0	2	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0009	810	2	0	0	2	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0010	810	1	0	0	0	0	1	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0011	810	1	0	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	a0012	810	1	0	0	1	0	0	copy fasta	PLG	chr6	160697244	160759097
PLIN1_chr15_89659367_89684367	0/1	a0001	522	365	86	69	151	16	42	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	1/0	a0002	522	75	3	12	57	1	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0003	522	5	0	0	0	0	5	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0004	522	3	2	1	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0005	522	2	0	2	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0006	522	2	2	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0007	522	1	0	0	0	1	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0008	522	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0009	522	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0010	522	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0011	522	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0012	522	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	a0013	522	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367