JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLIN5_chr19_4517531_4540224	0/0	a0009	463	1	0	1	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	a0010	463	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	a0011	463	1	0	0	0	0	1	copy fasta	PLIN5	chr19	4517531	4540224
PLK1_chr16_23673889_23695367	1/1	a0001	603	346	79	61	159	9	36	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0002	603	2	0	1	0	1	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0003	603	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0004	603	1	0	0	1	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0005	603	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0006	603	1	0	1	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0007	603	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	a0008	603	1	0	1	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK2_chr5_58448982_58465086	1/1	a0001	685	387	87	76	156	18	48	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	a0002	685	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	a0003	685	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	a0004	685	1	1	0	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK3_chr1_44795377_44810990	1/1	a0001	646	380	85	61	169	16	47	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	a0002	646	1	1	0	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	a0003	646	1	0	0	1	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	a0004	646	1	0	0	0	0	1	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	a0005	646	1	0	1	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK4_chr4_127875893_127904224	0/1	a0001	970	248	68	37	119	9	14	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	1/0	a0002	970	106	16	17	58	5	9	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0003	970	3	3	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0004	970	2	0	1	0	0	1	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0005	970	1	1	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0006	970	1	0	1	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0007	970	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0008	970	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	a0009	970	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK5_chr19_1519077_1541046	0/0	a0001	335	201	31	22	128	3	17	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	1/0	a0002	336	90	15	15	32	10	17	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/1	a0003	336	85	10	32	28	2	12	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0004	335	20	18	0	2	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0005	336	17	15	2	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0006	335	4	4	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0007	335	3	0	3	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0008	336	3	3	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0009	336	2	0	1	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0010	336	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0011	336	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0012	336	1	0	0	0	1	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0013	335	1	0	0	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	a0014	336	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLLP_chr16_57251097_57289672	1/1	a0001	182	369	89	74	144	16	44	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	a0002	182	1	1	0	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLN_chr6_118543296_118566716	1/1	a0001	52	384	94	74	154	18	42	copy fasta	PLN	chr6	118543296	118566716
PLOD1_chr1_11929717_11980537	1/1	a0001	727	243	41	50	117	7	26	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0002	727	68	18	7	35	3	5	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0003	727	50	27	4	14	0	5	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0004	727	10	9	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537