JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLOD1_chr1_11929717_11980537	0/0	a0005	727	1	0	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0006	727	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0007	727	1	0	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0008	727	1	0	0	0	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0009	727	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0010	727	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0011	727	1	0	0	0	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0012	727	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	a0013	727	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD2_chr3_146064440_146166184	1/1	a0001	758	352	85	65	157	11	32	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0002	758	6	5	1	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0003	758	2	0	0	2	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0004	758	1	0	0	0	1	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0005	758	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0006	758	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0007	758	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0008	758	1	0	0	1	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	a0009	758	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD3_chr7_101200984_101222581	1/1	a0001	738	367	90	63	148	18	46	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0002	738	26	0	0	26	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0003	738	23	3	2	16	0	2	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0004	738	2	1	1	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0005	738	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0006	738	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0007	738	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0008	738	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0009	738	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0010	738	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0011	738	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0012	738	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0013	738	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	a0014	738	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLP1_chrX_103771840_103797619	1/1	a0001	277	316	78	58	139	9	30	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	a0002	277	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP2_chrX_49166898_49180235	1/1	a0001	152	258	71	53	91	11	30	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	a0002	152	1	1	0	0	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	a0003	127	1	0	0	1	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLPBP_chr8_37757645_37784768	1/1	a0001	275	341	85	63	141	12	38	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	a0002	275	4	3	1	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	a0003	275	2	0	0	0	0	2	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	a0004	275	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPP1_chr5_55419854_55539964	1/1	a0001	284	293	76	47	130	8	30	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	a0002	35	1	0	1	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP2_chr19_276043_296403	1/1	a0001	288	235	53	38	103	9	30	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	a0002	288	118	38	34	31	5	10	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	a0003	288	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP3_chr1_56489761_56584563	1/1	a0001	311	335	98	58	128	13	36	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	a0002	311	1	0	0	0	1	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP4_chr10_120452227_120597065	1/1	a0001	271	328	88	52	148	12	26	copy fasta	PLPP4	chr10	120452227	120597065
PLPP5_chr8_38258130_38274224	1/1	a0001	264	318	68	64	142	14	28	copy fasta	PLPP5	chr8	38258130	38274224