JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLPP5_chr8_38258130_38274224	0/0	a0002	264	3	0	0	3	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	a0003	264	2	2	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	a0004	264	1	0	0	1	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP6_chr9_4657294_4670258	1/1	a0001	295	426	89	79	203	13	40	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	a0002	295	45	5	8	21	3	8	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	a0003	295	4	0	0	4	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	a0004	295	2	2	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	a0005	295	1	0	1	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP7_chr9_131284723_131314261	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/1	a0001	271	292	37	54	151	14	35	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	1/0	a0002	271	146	61	17	51	3	13	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	a0003	271	2	0	2	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	a0004	271	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	a0005	271	1	0	0	0	1	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	a0006	271	1	0	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPPR1_chr9_101023727_101330135	0/1	a0001	325	202	82	34	54	10	21	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	a0002	325	1	0	0	0	0	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR2_chr19_11350432_11370698	1/1	a0001	452	367	90	69	164	13	29	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	a0002	452	23	0	5	5	3	10	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	a0003	452	3	0	0	0	0	3	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	a0004	452	1	0	0	1	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR3_chr19_807488_826955	0/0	a0000	0	26	1	5	16	0	4	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	1/1	a0001	718	265	29	55	130	15	34	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0002	718	30	21	2	2	2	3	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0003	718	29	28	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0004	718	12	11	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0005	718	9	2	2	2	0	3	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0006	718	7	0	0	7	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0007	718	4	0	3	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0008	718	4	0	3	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0009	718	2	0	0	0	1	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0010	718	2	2	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0011	718	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0012	718	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0013	718	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0014	718	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0015	718	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0016	718	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0017	718	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	a0018	718	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR4_chr1_99259492_99314584	1/1	a0001	715	384	92	74	166	10	40	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR5_chr1_98885245_99009861	1/1	a0001	321	279	86	51	98	8	34	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	a0002	321	1	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLRG1_chr4_154530005_154555400	1/1	a0001	514	428	97	80	183	16	50	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	a0002	514	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	a0003	514	1	0	0	1	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLS1_chr3_142591393_142718664	1/1	a0001	629	255	65	50	106	12	20	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	a0002	629	14	14	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	a0003	629	4	3	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	a0004	629	2	2	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664