JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AR_chrX_67539021_67735619	0/0	a0001	919	18	0	2	13	1	2	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0002	923	12	0	3	6	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0003	922	11	2	1	6	1	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0004	921	10	0	5	4	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	1/0	a0005	920	7	0	0	5	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0006	915	6	4	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0007	918	6	0	1	2	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0008	919	6	3	0	0	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0009	918	6	6	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0010	922	6	2	0	3	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0011	917	5	4	0	0	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0012	918	5	3	1	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0013	920	5	1	3	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/1	a0014	921	5	0	1	2	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0015	920	5	2	0	2	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0016	920	3	2	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0017	918	3	3	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0018	919	3	3	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0019	924	3	0	1	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0020	925	3	0	1	1	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0021	917	2	0	2	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0022	914	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0023	916	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0024	916	2	0	0	1	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0025	914	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0026	917	2	1	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0027	915	2	1	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0028	916	2	0	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0029	917	2	1	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0030	919	2	0	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0031	924	2	1	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0032	923	2	0	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0033	924	2	0	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0034	912	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0035	914	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0036	912	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0037	913	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0038	913	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0039	917	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0040	917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0041	913	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0042	914	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0043	915	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0044	920	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0045	907	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0046	911	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0047	919	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0048	921	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0049	913	1	0	0	0	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0050	916	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619