JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLS1_chr3_142591393_142718664	0/0	a0005	629	1	0	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS3_chrX_115556174_115655861	1/1	a0001	630	253	73	47	98	7	26	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	a0002	630	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLSCR1_chr3_146510180_146549607	1/1	a0001	318	323	85	56	127	17	36	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	a0002	318	10	0	7	0	1	2	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	a0003	318	7	7	0	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	a0004	313	1	0	1	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	a0005	318	1	0	0	1	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR2_chr3_146428288_146474561	1/1	a0001	224	351	79	57	167	12	34	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	a0002	224	12	0	1	11	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	a0003	224	1	1	0	0	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR3_chr17_7384727_7399525	1/0	a0001	295	261	49	45	149	3	14	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/1	a0002	295	192	49	43	58	13	28	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	a0003	295	1	0	0	1	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR4_chr3_146187335_146256105	1/0	a0001	329	263	56	40	132	6	28	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/1	a0002	329	85	7	28	34	4	11	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	a0003	329	24	22	2	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	a0004	329	4	4	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	a0005	314	3	3	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	a0006	329	1	0	0	0	0	1	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR5_chr3_146580837_146610346	1/1	a0001	271	405	86	62	191	18	46	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	a0002	271	6	6	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	a0003	271	3	0	0	3	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	a0004	271	1	1	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	a0005	271	1	1	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLTP_chr20_45893622_45917155	1/1	a0001	493	422	88	70	205	12	45	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	a0002	493	6	6	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	a0003	493	1	0	0	1	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	a0004	493	1	0	1	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	a0005	493	1	0	0	0	0	1	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	a0006	493	1	0	1	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLVAP_chr19_17346455_17382342	1/1	a0001	442	422	98	71	184	18	49	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0002	442	7	0	7	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0003	442	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0004	442	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0005	442	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0006	442	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0007	442	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0008	442	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	a0009	442	1	0	0	0	0	1	copy fasta	PLVAP	chr19	17346455	17382342
PLXDC1_chr17_39058313_39156637	1/1	a0001	500	285	68	52	118	11	34	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0002	500	27	2	8	14	1	2	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0003	500	3	0	0	3	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0004	500	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0005	500	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0006	500	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0007	500	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	a0008	500	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC2_chr10_19811432_20294856	0/0	a0001	529	97	51	17	13	3	13	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/1	a0002	529	49	17	9	14	0	8	copy fasta	PLXDC2	chr10	19811432	20294856