JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLXNB2_chr22_50269979_50312646	0/0	a0007	1838	4	0	1	3	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0008	1838	4	4	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0009	1838	3	0	2	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0010	1838	3	0	1	0	0	2	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0011	1838	3	0	2	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0012	1838	3	0	1	2	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0013	1838	2	0	0	1	1	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0014	1838	2	2	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0015	1838	2	2	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0016	1838	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0017	1838	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0018	1838	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0019	1838	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0020	1838	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0021	1838	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0022	1838	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0023	1838	1	0	1	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0024	1838	1	0	1	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0025	1838	1	0	0	0	1	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0026	1838	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0027	1838	1	0	0	0	1	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	a0028	1838	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB3_chrX_153759249_153784341	0/0	a0001	1909	137	29	23	74	1	10	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/1	a0002	1909	61	16	18	10	5	11	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	1/0	a0003	1909	55	11	8	28	2	5	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0004	1909	17	16	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0005	1909	5	0	2	0	0	3	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0006	1576	3	0	0	1	1	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0007	1909	2	0	0	0	0	2	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0008	1909	2	0	0	0	2	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0009	1909	2	0	0	2	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0010	1909	2	2	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0011	1729	2	0	0	1	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0012	1909	1	0	0	0	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0013	557	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0014	1909	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0015	1243	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0016	1354	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0017	1729	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0018	1576	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0019	1909	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0020	1909	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0021	1839	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0022	1243	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0023	1846	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0024	1909	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0025	1054	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0026	847	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0027	1909	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0028	362	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341