JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PLXNB3_chrX_153759249_153784341	0/0	a0029	1909	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0030	256	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	a0031	50	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNC1_chr12_94143577_94312675	1/1	a0001	1568	268	61	56	103	10	36	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0002	1568	18	13	4	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0003	1568	4	1	1	0	2	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0004	1568	4	4	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0005	1568	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0006	1568	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0007	1568	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	a0008	1568	1	0	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXND1_chr3_129550214_129611676	0/0	a0001	1925	187	18	32	106	6	25	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0002	1925	112	34	17	51	2	8	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/1	a0003	1925	42	13	16	0	6	6	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0004	1925	29	6	3	15	1	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0005	1925	5	5	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0006	1925	4	3	0	0	0	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0007	1925	3	2	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0008	1925	2	0	0	0	1	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0009	1925	2	2	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0010	1925	2	2	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0011	1925	2	2	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0012	1925	2	0	0	0	2	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0013	1925	2	0	0	2	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0014	1925	2	0	0	2	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0015	1925	2	0	0	2	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0016	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0017	1925	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0018	1925	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0019	1925	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0020	1925	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0021	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0022	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	1/0	a0023	1925	1	0	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0024	1925	1	0	0	0	0	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0025	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0026	1925	1	0	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0027	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0028	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0029	1925	1	0	0	0	0	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0030	1925	1	1	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0031	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0032	1925	1	0	0	0	0	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	a0033	1925	1	0	0	1	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PM20D1_chr1_205823025_205855132	0/0	a0001	502	80	12	16	39	4	9	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/1	a0002	502	77	30	19	17	1	9	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	1/0	a0003	502	67	3	10	42	2	9	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0004	502	28	7	16	0	2	3	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0005	502	23	0	0	18	0	5	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0006	502	21	0	1	18	0	2	copy fasta	PM20D1	chr1	205823025	205855132