JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PM20D1_chr1_205823025_205855132	0/0	a0007	502	18	0	0	17	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0008	502	15	1	1	10	0	3	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0009	502	15	12	2	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0010	502	11	7	1	0	3	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0011	502	10	5	1	3	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0012	502	5	2	3	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0013	502	4	3	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0014	502	4	3	0	0	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0015	502	4	0	0	4	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0016	502	3	1	2	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0017	502	3	3	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0018	502	3	2	0	0	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0019	502	3	0	0	3	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0020	502	3	0	3	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0021	502	2	2	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0022	502	2	0	0	2	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0023	502	2	2	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0024	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0025	502	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0026	502	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0027	502	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0028	502	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0029	502	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0030	502	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0031	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0032	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0033	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0034	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0035	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	a0036	502	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D2_chr6_89141055_89170565	1/1	a0001	436	363	88	76	148	14	35	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	a0002	436	7	0	0	6	0	1	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	a0003	436	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	a0004	436	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PMAIP1_chr18_59894996_59909305	1/1	a0001	54	458	96	80	216	18	46	copy fasta	PMAIP1	chr18	59894996	59909305
PMCH_chr12_102191459_102202833	1/1	a0001	165	404	96	70	188	12	36	copy fasta	PMCH	chr12	102191459	102202833
PMEL_chr12_55949105_55971042	1/1	a0001	661	354	61	78	155	18	40	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0002	661	10	9	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0003	661	8	6	2	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0004	661	8	7	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0005	661	5	0	0	5	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0006	661	2	0	2	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0007	661	2	2	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0008	661	2	2	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0009	661	1	0	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0010	661	1	0	0	1	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0011	661	1	1	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0012	661	1	0	0	1	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	a0013	661	1	0	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEPA1_chr20_57643396_57715015	1/1	a0001	287	327	72	77	128	13	35	copy fasta	PMEPA1	chr20	57643396	57715015