JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PMM2_chr16_8792839_8854325	0/0	a0004	246	4	0	0	4	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0005	246	2	0	1	0	1	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0006	246	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0007	246	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	a0008	246	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMP22_chr17_15224779_15270326	1/1	a0001	160	424	91	84	189	12	46	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	a0002	160	1	0	0	1	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	a0003	160	1	1	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP2_chr8_81435326_81452439	1/1	a0001	132	420	91	73	204	12	38	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	a0002	132	6	5	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	a0003	132	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	a0004	132	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMPCA_chr9_136405658_136428761	1/1	a0001	525	386	99	78	154	17	36	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	a0002	525	2	0	0	2	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	a0003	525	1	0	0	0	1	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	a0004	525	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCB_chr7_103292435_103319686	1/1	a0001	489	358	60	62	182	13	39	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0002	489	32	0	7	19	1	5	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0003	489	31	29	2	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0004	489	8	0	0	8	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0005	489	2	0	2	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0006	489	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0007	489	1	0	1	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0008	489	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0009	489	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	a0010	489	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMS1_chr2_189779450_189882629	1/1	a0001	932	224	85	35	72	8	22	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0002	932	2	2	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0003	932	2	2	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0004	932	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0005	932	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0006	932	1	0	1	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0007	932	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0008	932	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	a0009	932	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS2_chr7_5965925_6014049	0/0	a0001	862	122	24	28	54	8	8	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0002	862	86	2	2	69	0	13	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0003	862	55	20	10	14	2	9	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	1/0	a0004	862	41	8	15	14	1	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/1	a0005	862	29	8	12	2	2	4	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0006	862	18	0	2	14	0	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0007	862	13	12	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0008	862	9	0	0	9	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0009	862	6	6	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0010	862	6	2	1	3	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0011	862	3	0	2	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0012	862	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0013	862	2	0	0	0	0	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0014	862	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0015	862	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049