JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PMS2_chr7_5965925_6014049	0/0	a0016	862	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0017	862	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0018	862	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0019	862	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0020	862	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0021	862	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0022	862	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0023	862	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0024	862	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0025	862	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0026	581	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0027	862	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0028	862	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	a0029	862	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMVK_chr1_154919740_154941719	1/1	a0001	192	257	63	52	94	12	34	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	a0002	192	29	28	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	a0003	192	4	4	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	a0004	192	2	0	0	0	0	2	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	a0005	192	1	0	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	a0006	192	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PNCK_chrX_153664733_153678813	1/1	a0001	343	273	75	45	115	11	25	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	a0002	218	2	1	0	0	0	1	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	a0003	343	1	0	1	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNISR_chr6_99393050_99430308	1/1	a0001	805	396	85	82	169	14	44	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0002	805	2	0	0	2	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0003	805	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0004	805	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0005	805	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0006	805	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0007	805	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0008	805	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0009	805	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	a0010	805	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNKD_chr2_218265519_218351793	1/1	a0001	385	274	87	58	88	12	27	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	a0002	385	3	3	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	a0003	385	1	0	0	1	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	a0004	385	1	0	0	1	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	a0005	385	1	0	0	0	0	1	copy fasta	PNKD	chr2	218265519	218351793
PNKP_chr19_49856204_49872576	1/1	a0001	521	402	81	75	184	12	48	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0002	521	7	0	0	7	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0003	521	3	2	1	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0004	521	3	0	0	3	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0005	521	2	2	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0006	521	2	2	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0007	521	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0008	521	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0009	521	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0010	521	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0011	521	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0012	521	1	0	0	0	0	1	copy fasta	PNKP	chr19	49856204	49872576