JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNKP_chr19_49856204_49872576	0/0	a0013	521	1	0	0	0	0	1	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0014	521	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0015	521	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0016	521	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	a0017	521	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNLDC1_chr6_159795276_159825704	1/1	a0001	531	397	91	74	171	16	43	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	a0002	531	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	a0003	536	1	0	0	0	0	1	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	a0004	531	1	1	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLIPRP1_chr10_116585959_116614175	1/1	a0001	467	271	89	62	71	12	35	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0002	467	72	1	2	64	1	4	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0003	467	42	3	11	26	0	2	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0004	467	19	0	0	19	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0005	467	5	0	1	0	2	2	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0006	467	5	0	5	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0007	467	2	0	1	0	0	1	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0008	159	1	0	0	1	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0009	467	1	1	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0010	467	1	0	0	1	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	a0011	467	1	0	0	0	1	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP3_chr10_116422847_116482957	0/1	a0001	467	124	35	18	47	6	17	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0002	467	63	23	1	38	0	1	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0003	467	56	13	3	36	0	4	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0004	467	11	1	6	4	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	1/0	a0005	467	10	9	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0006	467	8	0	6	2	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0007	467	5	0	5	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0008	467	3	3	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0009	467	3	0	0	3	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0010	467	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0011	467	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0012	467	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0013	467	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	a0014	467	1	0	1	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIP_chr10_116540931_116572855	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	1/1	a0001	465	264	80	38	116	2	26	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	a0002	465	7	0	0	7	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	a0003	465	2	2	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	a0004	465	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	a0005	465	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNMA1_chr14_73706783_73719384	1/1	a0001	353	403	87	75	186	14	39	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	a0002	353	5	4	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	a0003	353	3	3	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	a0004	353	1	0	0	0	0	1	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	a0005	353	1	0	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	a0006	353	1	0	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA2_chr8_26499701_26518872	1/1	a0001	364	324	84	58	123	15	42	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	a0002	364	87	7	16	57	1	6	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	a0003	364	2	0	0	0	0	2	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	a0004	364	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872