JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AR_chrX_67539021_67735619	0/0	a0051	917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0052	918	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0053	917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0054	918	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0055	921	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0056	923	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0057	495	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0058	917	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0059	922	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0060	923	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0061	917	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0062	918	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0063	920	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0064	921	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0065	923	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0066	925	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0067	919	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0068	923	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0069	923	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0070	926	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0071	79	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	a0072	917	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AS3MT_chr10_102864470_102906899	1/1	a0001	5	361	79	66	166	14	34	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	a0002	5	1	1	0	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
ASAH1_chr8_18050992_18089107	0/1	a0001	395	173	23	45	76	10	18	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	a0002	395	163	32	25	81	8	17	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	1/0	a0003	395	67	39	3	20	0	4	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	a0004	395	7	0	0	7	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	a0005	395	5	0	0	0	0	5	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	a0006	395	5	0	1	4	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH2B_chr10_50734936_50764255	0/1	a0001	20	347	49	61	194	10	32	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	1/0	a0002	160	67	43	11	2	0	10	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2_chr10_50179861_50256516	1/0	a0001	780	174	70	23	68	0	12	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/1	a0002	780	132	19	31	61	7	13	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0003	780	91	3	20	56	8	4	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0004	780	2	1	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0005	780	2	1	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0006	82	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0007	780	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0008	780	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0009	780	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0010	780	1	0	0	0	1	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0011	780	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	a0012	780	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAP1_chr8_130047104_130448674	1/0	a0001	1129	159	67	33	40	4	14	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/1	a0002	1129	147	15	22	82	9	18	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	a0003	1129	1	0	0	0	1	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	a0004	1129	1	0	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP2_chr2_9201812_9410678	0/0	a0001	1006	127	70	28	14	6	9	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	a0002	1006	81	10	24	29	2	16	copy fasta	ASAP2	chr2	9201812	9410678