JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNMA2_chr8_26499701_26518872	0/0	a0005	364	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	a0006	364	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA3_chrX_153051470_153065462	1/1	a0001	463	293	67	57	131	8	28	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0002	463	23	7	7	4	1	4	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0003	463	6	5	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0004	375	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0005	286	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0006	180	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	a0007	50	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA5_chrX_152983824_152999116	1/1	a0001	448	279	66	51	121	7	32	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0002	30	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0003	92	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0004	448	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0005	116	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0006	448	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0007	448	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	a0008	38	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA6A_chrX_153067454_153080019	1/1	a0001	399	32	8	5	7	4	6	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0002	399	26	2	5	18	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0003	399	6	1	0	5	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0004	382	5	1	1	2	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0005	382	2	0	1	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0006	30	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0007	30	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0008	399	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0009	171	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0010	152	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0011	296	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0012	399	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0013	305	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0014	361	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0015	243	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0016	399	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0017	382	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0018	60	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0019	30	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	a0020	30	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6E_chrX_153390639_153406350	0/1	a0001	647	162	26	28	84	6	17	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	1/0	a0002	647	128	33	25	50	4	15	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0003	659	13	0	10	0	1	2	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0004	653	9	5	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0005	653	5	1	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0006	647	4	4	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0007	629	3	2	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0008	653	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0009	647	2	0	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0010	641	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0011	647	2	0	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0012	514	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0013	647	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350