JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNMA6E_chrX_153390639_153406350	0/0	a0014	647	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0015	514	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0016	514	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0017	514	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0018	641	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0019	647	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0020	647	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0021	647	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0022	647	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0023	72	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0024	134	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	a0025	647	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6F_chrX_153312680_153326767	1/1	a0001	578	201	46	38	82	9	24	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0002	578	114	25	17	60	2	10	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0003	578	5	5	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0004	578	2	2	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0005	23	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0006	578	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0007	555	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0008	578	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0009	222	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0010	224	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0011	128	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0012	77	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	a0013	578	1	0	1	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA8A_chr19_46461503_46476563	1/1	a0001	439	422	82	79	195	17	47	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0002	439	18	13	3	1	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0003	439	7	0	0	7	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0004	439	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0005	439	1	0	0	0	1	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0006	439	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0007	439	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0008	439	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0009	439	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	a0010	439	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8B_chr19_46486191_46500867	1/1	a0001	635	295	63	48	136	9	37	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0002	635	82	10	14	54	0	4	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0003	637	23	4	13	2	3	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0004	635	6	5	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0005	635	4	4	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0006	635	2	0	2	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0007	635	2	1	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0008	635	2	2	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0009	635	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0010	635	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0011	635	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0012	637	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0013	635	1	0	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0014	635	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0015	635	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867