JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNMA8B_chr19_46486191_46500867	0/0	a0016	635	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0017	635	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	a0018	633	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8C_chr19_46419697_46433936	1/1	a0001	204	413	83	78	184	18	48	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	a0002	204	28	17	3	8	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	a0003	204	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMT_chr17_39663453_39675475	1/1	a0001	282	373	86	80	153	18	34	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	a0002	282	1	0	0	1	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	a0003	282	1	1	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	a0004	282	1	1	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNN_chr14_39170254_39188220	0/0	a0001	717	325	76	59	137	14	39	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	a0002	717	75	7	6	59	1	2	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	1/1	a0003	717	40	8	16	8	3	3	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	a0004	717	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	a0005	717	1	0	1	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	a0006	717	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	a0007	717	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNO1_chr2_68152888_68181238	0/0	a0001	252	303	87	58	118	9	31	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	1/1	a0002	252	132	2	26	82	5	15	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	a0003	252	8	7	1	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	a0004	252	1	0	1	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNOC_chr8_28312268_28348351	1/1	a0001	176	386	92	78	166	10	38	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	a0002	176	34	0	0	30	0	4	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	a0003	176	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	a0004	176	1	0	1	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	a0005	176	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	a0006	176	1	0	1	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNPLA1_chr6_36265060_36318955	0/0	a0001	572	124	30	22	61	3	8	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/1	a0002	572	57	2	10	32	4	8	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	1/0	a0003	572	53	17	7	20	1	7	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0004	572	41	18	7	7	1	8	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0005	572	26	0	14	10	2	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0006	572	17	8	1	5	0	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0007	572	13	0	6	1	1	5	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0008	572	11	0	0	9	0	2	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0009	572	5	5	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0010	572	5	1	0	3	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0011	572	4	0	0	0	0	4	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0012	572	4	4	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0013	572	4	0	1	3	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0014	487	3	0	1	0	2	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0015	572	3	0	0	3	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0016	572	2	2	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0017	572	2	2	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0018	572	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0019	568	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0020	572	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0021	572	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0022	572	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0023	572	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955