JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNPLA1_chr6_36265060_36318955	0/0	a0024	572	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0025	572	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0026	572	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0027	572	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0028	572	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	a0029	572	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA2_chr11_813914_830573	0/1	a0001	504	281	60	51	135	13	21	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	1/0	a0002	504	144	25	26	60	5	27	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0003	504	7	5	2	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0004	504	6	0	0	6	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0005	504	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0006	504	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0007	504	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	a0008	504	1	0	1	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA3_chr22_43918805_43952582	0/0	a0001	481	171	56	20	73	6	16	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0002	481	105	5	27	63	5	5	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	1/0	a0003	481	67	9	16	24	4	13	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0004	481	11	5	2	4	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0005	481	10	2	3	3	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0006	481	9	2	3	1	1	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0007	481	9	9	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0008	481	9	9	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0009	481	7	0	0	5	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0010	481	6	0	5	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0011	481	5	0	0	3	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0012	481	3	0	0	3	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0013	481	2	0	0	2	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0014	481	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0015	481	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0016	481	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/1	a0017	481	1	0	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0018	481	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	a0019	481	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA4_chrX_7893247_7932413	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	1/1	a0001	253	333	71	59	162	9	30	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	a0002	253	3	0	1	2	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	a0003	253	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA5_chr22_43874678_43897013	1/1	a0001	429	167	56	49	26	13	21	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0002	429	131	10	13	85	3	20	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0003	429	117	13	17	81	2	4	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0004	429	8	5	3	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0005	429	3	3	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0006	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0007	429	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0008	429	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0009	429	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0010	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0011	429	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0012	429	1	0	0	0	0	1	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0013	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013