JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNPLA5_chr22_43874678_43897013	0/0	a0014	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0015	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0016	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	a0017	429	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA6_chr19_7530717_7566764	1/1	a0001	1365	356	73	70	169	10	32	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0002	1365	37	9	11	0	6	11	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0003	1365	11	0	0	10	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0004	1365	6	6	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0005	1365	2	2	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0006	1365	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0007	1365	1	0	1	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0008	1361	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	a0009	1375	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA7_chr9_137454952_137555402	0/1	a0001	1342	99	27	18	31	6	16	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0002	1342	19	6	1	9	1	2	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0003	1342	10	3	1	3	0	3	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0004	1342	5	5	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0005	1342	5	0	0	4	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0006	1342	4	1	0	3	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0007	1342	4	4	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0008	1342	3	3	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0009	1342	3	0	2	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0010	1342	3	3	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0011	1342	3	2	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0012	1342	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0013	934	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0014	1342	2	1	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	1/0	a0015	1342	2	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0016	1342	2	1	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0017	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0018	664	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0019	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0020	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0021	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0022	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0023	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0024	1342	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0025	1342	1	0	0	0	1	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0026	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0027	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0028	1342	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0029	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0030	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0031	1342	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0032	1342	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0033	574	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0034	1342	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0035	1342	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	a0036	1342	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA8_chr7_108465417_108531135	1/1	a0001	782	382	90	66	172	12	40	copy fasta	PNPLA8	chr7	108465417	108531135