JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PNPLA8_chr7_108465417_108531135	0/0	a0002	782	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0003	782	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0004	782	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0005	782	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0006	782	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0007	782	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0008	782	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	a0009	782	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPO_chr17_47936571_47954308	1/1	a0001	261	371	90	74	149	14	42	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	a0002	261	8	0	4	0	4	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	a0003	261	1	0	0	1	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPT1_chr2_55629061_55698844	1/0	a0001	783	217	27	37	111	5	36	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0002	783	122	36	30	42	5	9	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/1	a0003	783	44	28	5	8	0	2	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0004	783	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0005	783	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0006	783	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0007	783	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0008	783	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0009	783	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	a0010	783	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNP_chr14_20464406_20482089	1/1	a0001	289	341	70	64	159	14	32	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0002	289	99	20	13	56	4	6	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0003	289	3	2	1	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0004	289	2	2	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0005	289	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0006	289	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	a0007	289	1	0	0	1	0	0	copy fasta	PNP	chr14	20464406	20482089
PNRC1_chr6_89075751_89090160	1/1	a0001	327	386	89	77	167	13	38	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0002	327	2	2	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0003	327	2	0	0	0	2	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0004	327	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0005	327	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0006	327	1	0	1	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0007	327	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0008	327	1	0	0	0	1	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	a0009	327	1	0	0	1	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC2_chr1_23954828_23968462	1/1	a0001	139	411	90	74	188	14	43	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	a0002	139	1	0	0	0	0	1	copy fasta	PNRC2	chr1	23954828	23968462
POC1A_chr3_52070226_52159423	1/1	a0001	407	270	57	49	126	8	28	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	a0002	407	10	10	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	a0003	407	4	4	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	a0004	407	1	0	1	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	a0005	407	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1B_chr12_89414718_89531047	1/1	a0001	478	368	81	68	171	10	36	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	a0002	478	1	0	0	1	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	a0003	478	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC5_chr5_75669124_75722437	0/0	a0001	575	137	45	28	46	5	13	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	1/1	a0002	575	111	5	21	65	6	12	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	a0003	575	96	15	11	59	1	10	copy fasta	POC5	chr5	75669124	75722437